3D structure

PDB id
9F1B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E
Experimental method
ELECTRON MICROSCOPY
Resolution
3.01 Å

Loop

Sequence
CAG*CG(PSU)AG*UCCG
Length
12 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9F1B_013 not in the Motif Atlas
Homologous match to J3_8C3A_004
Geometric discrepancy: 0.1446
The information below is about J3_8C3A_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_44724.5
Basepair signature
cWW-tSH-F-cWW-tHS-cWW-F
Number of instances in this motif group
6

Unit IDs

9F1B|1|B5|C|1501
9F1B|1|B5|A|1502
9F1B|1|B5|G|1503
*
9F1B|1|B5|C|1535
9F1B|1|B5|G|1536
9F1B|1|B5|PSU|1537
9F1B|1|B5|A|1538
9F1B|1|B5|G|1539
*
9F1B|1|B5|U|1564
9F1B|1|B5|C|1565
9F1B|1|B5|C|1566
9F1B|1|B5|G|1567

Current chains

Chain B5
28S rRNA

Nearby chains

Chain BA
Large ribosomal subunit protein uL2
Chain BR
Ribosomal protein L19
Chain Bg
Large ribosomal subunit protein eL34
Chain Bp
60S ribosomal protein L37a

Coloring options:


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