J3_9F1B_014

3D structure

PDB id

9F1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9F1B_014 not in the Motif Atlas

Homologous match to J3_8P9A_052

Geometric discrepancy: 0.2875

The information below is about J3_8P9A_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37832.1

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

5

Unit IDs

9F1B|1|B5|G|1908
9F1B|1|B5|A|1909
9F1B|1|B5|C|1910
*
9F1B|1|B5|G|1934
9F1B|1|B5|C|1935
9F1B|1|B5|U|1936
9F1B|1|B5|A|1937
9F1B|1|B5|A|1938
9F1B|1|B5|G|1939
9F1B|1|B5|G|1940
*
9F1B|1|B5|C|1955
9F1B|1|B5|A|1956
9F1B|1|B5|C|1957

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Bs

Large ribosomal subunit protein uL10

Chain Bt

60S ribosomal protein L12