J3_9F1B_018

3D structure

PDB id

9F1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

CGG*CUGAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9F1B_018 not in the Motif Atlas

Geometric match to J3_8VTW_006

Geometric discrepancy: 0.136

The information below is about J3_8VTW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.4

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

9F1B|1|B5|C|3669
9F1B|1|B5|G|3670
9F1B|1|B5|G|3671
*
9F1B|1|B5|C|3802
9F1B|1|B5|U|3803
9F1B|1|B5|G|3804
9F1B|1|B5|A|3805
9F1B|1|B5|C|3806
*
9F1B|1|B5|G|3914
9F1B|1|B5|G|3915
9F1B|1|B5|A|3916
9F1B|1|B5|C|3917
9F1B|1|B5|A|3918
9F1B|1|B5|G|3919

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BA

Large ribosomal subunit protein uL2

Chain BG

60S ribosomal protein L7a

Chain BN

Ribosomal protein L15