J3_9F1B_024
3D structure
- PDB id
- 9F1B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.01 Å
Loop
- Sequence
- AGAUUAAG*CGCGC(A2M)AAU*(A2M)GU
- Length
- 20 nucleotides
- Bulged bases
- 9F1B|1|A2|A|46
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9F1B_024 not in the Motif Atlas
- Homologous match to J3_8P9A_069
- Geometric discrepancy: 0.0797
- The information below is about J3_8P9A_069
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46317.4
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
9F1B|1|A2|A|40
9F1B|1|A2|G|41
9F1B|1|A2|A|42
9F1B|1|A2|U|43
9F1B|1|A2|U|44
9F1B|1|A2|A|45
9F1B|1|A2|A|46
9F1B|1|A2|G|47
*
9F1B|1|A2|C|480
9F1B|1|A2|G|481
9F1B|1|A2|C|482
9F1B|1|A2|G|483
9F1B|1|A2|C|484
9F1B|1|A2|A2M|485
9F1B|1|A2|A|486
9F1B|1|A2|A|487
9F1B|1|A2|U|488
*
9F1B|1|A2|A2M|513
9F1B|1|A2|G|514
9F1B|1|A2|U|515
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain Ai
- 40S ribosomal protein S9
- Chain Aw
- 40S ribosomal protein S23
Coloring options: