3D structure

PDB id
9F1B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E
Experimental method
ELECTRON MICROSCOPY
Resolution
3.01 Å

Loop

Sequence
CGAUAGUCAACAAGUAC*GGAAAG*CUCG
Length
27 nucleotides
Bulged bases
9F1B|1|B5|U|354, 9F1B|1|B5|A|362, 9F1B|1|B8|C|23
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9F1B_032 not in the Motif Atlas
Homologous match to J3_8P9A_045
Geometric discrepancy: 0.0612
The information below is about J3_8P9A_045
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_30040.2
Basepair signature
cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
Number of instances in this motif group
7

Unit IDs

9F1B|1|B5|C|351
9F1B|1|B5|G|352
9F1B|1|B5|A|353
9F1B|1|B5|U|354
9F1B|1|B5|A|355
9F1B|1|B5|G|356
9F1B|1|B5|U|357
9F1B|1|B5|C|358
9F1B|1|B5|A|359
9F1B|1|B5|A|360
9F1B|1|B5|C|361
9F1B|1|B5|A|362
9F1B|1|B5|A|363
9F1B|1|B5|G|364
9F1B|1|B5|U|365
9F1B|1|B5|A|366
9F1B|1|B5|C|367
*
9F1B|1|B5|G|374
9F1B|1|B5|G|375
9F1B|1|B5|A|376
9F1B|1|B5|A|377
9F1B|1|B5|A|378
9F1B|1|B5|G|379
*
9F1B|1|B8|C|21
9F1B|1|B8|U|22
9F1B|1|B8|C|23
9F1B|1|B8|G|24

Current chains

Chain B5
28S rRNA
Chain B8
5.8S rRNA

Nearby chains

Chain BC
60S ribosomal protein L4
Chain BK
Nascent chain
Chain BY
Ribosomal protein L26
Chain Bj
Ribosomal protein L37
Chain Bl
60S ribosomal protein L39-like

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1871 s