3D structure

PDB id
9F1B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E
Experimental method
ELECTRON MICROSCOPY
Resolution
3.01 Å

Loop

Sequence
UUGAAAAGAAC*GAGUUCAAGAGGGCG*CA
Length
28 nucleotides
Bulged bases
9F1B|1|B5|G|409, 9F1B|1|B5|G|413
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9F1B_034 not in the Motif Atlas
Homologous match to J3_8C3A_049
Geometric discrepancy: 0.299
The information below is about J3_8C3A_049
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_91149.1
Basepair signature
cWW-cWS-tSH-F-tWH-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-F-cWW-cWW
Number of instances in this motif group
6

Unit IDs

9F1B|1|B5|U|380
9F1B|1|B5|U|381
9F1B|1|B5|G|382
9F1B|1|B5|A|383
9F1B|1|B5|A|384
9F1B|1|B5|A|385
9F1B|1|B5|A|386
9F1B|1|B5|G|387
9F1B|1|B5|A|388
9F1B|1|B5|A|389
9F1B|1|B5|C|390
*
9F1B|1|B5|G|401
9F1B|1|B5|A|402
9F1B|1|B5|G|403
9F1B|1|B5|U|404
9F1B|1|B5|U|405
9F1B|1|B5|C|406
9F1B|1|B5|A|407
9F1B|1|B5|A|408
9F1B|1|B5|G|409
9F1B|1|B5|A|410
9F1B|1|B5|G|411
9F1B|1|B5|G|412
9F1B|1|B5|G|413
9F1B|1|B5|C|414
9F1B|1|B5|G|415
*
9F1B|1|B8|C|19
9F1B|1|B8|A|20

Current chains

Chain B5
28S rRNA
Chain B8
5.8S rRNA

Nearby chains

Chain BC
60S ribosomal protein L4
Chain BK
Nascent chain
Chain BP
Large ribosomal subunit protein uL22
Chain BY
Ribosomal protein L26
Chain Bl
60S ribosomal protein L39-like
Chain Cu
Transcription factor BTF3
Chain DB
N-alpha-acetyltransferase 15, NatA auxiliary subunit

Coloring options:


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