J3_9F1B_040

3D structure

PDB id

9F1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

AGAAG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9F1B_040 not in the Motif Atlas

Homologous match to J3_8P9A_058

Geometric discrepancy: 0.1443

The information below is about J3_8P9A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_12393.2

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

9F1B|1|B5|A|2441
9F1B|1|B5|G|2442
9F1B|1|B5|A|2443
9F1B|1|B5|A|2444
9F1B|1|B5|G|2445
*
9F1B|1|B5|C|2580
9F1B|1|B5|C|2581
*
9F1B|1|B5|G|2585
9F1B|1|B5|A|2586
9F1B|1|B5|A|2587
9F1B|1|B5|A|2588
9F1B|1|B5|A|2589
9F1B|1|B5|U|2590

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BA

Large ribosomal subunit protein uL2

Chain Bg

Large ribosomal subunit protein eL34

Chain Bp

60S ribosomal protein L37a