J3_9F1D_003

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

CUG*UUCCG*CAAAG

Length

13 nucleotides

Bulged bases

9F1D|1|A2|C|1139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9F1D|1|A2|C|1095
9F1D|1|A2|U|1096
9F1D|1|A2|G|1097
*
9F1D|1|A2|U|1137
9F1D|1|A2|U|1138
9F1D|1|A2|C|1139
9F1D|1|A2|C|1140
9F1D|1|A2|G|1141
*
9F1D|1|A2|C|1148
9F1D|1|A2|A|1149
9F1D|1|A2|A|1150
9F1D|1|A2|A|1151
9F1D|1|A2|G|1152

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AA

40S ribosomal protein S27

Chain AE

Small ribosomal subunit protein eS26

Chain AZ

40S ribosomal protein SA

Chain Au

Small ribosomal subunit protein eS21

Chain Av

Ribosomal protein S15a