J3_9F1D_008
3D structure
- PDB id
- 9F1D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.26 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9F1D_008 not in the Motif Atlas
- Homologous match to J3_4V88_039
- Geometric discrepancy: 0.1751
- The information below is about J3_4V88_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47248.1
- Basepair signature
- cWW-F-F-F-F-F-tHH-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
9F1D|1|A2|U|1341
9F1D|1|A2|C|1342
9F1D|1|A2|U|1343
9F1D|1|A2|U|1344
9F1D|1|A2|A|1345
9F1D|1|A2|G|1346
*
9F1D|1|A2|C|1385
9F1D|1|A2|G|1386
9F1D|1|A2|A|1387
9F1D|1|A2|G|1388
9F1D|1|A2|A|1389
9F1D|1|A2|C|1390
*
9F1D|1|A2|G|1482
9F1D|1|A2|C|1483
9F1D|1|A2|A|1484
9F1D|1|A2|A|1485
9F1D|1|A2|U|1486
9F1D|1|A2|A|1487
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AG
- 40S ribosomal protein S29
- Chain Ab
- Small ribosomal subunit protein uS5
- Chain Ac
- 40S ribosomal protein S3
- Chain Ap
- Small ribosomal subunit protein uS9
- Chain Aq
- 40S ribosomal protein eS17
- Chain At
- 40S ribosomal protein uS10
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