3D structure

PDB id
9F1D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK
Experimental method
ELECTRON MICROSCOPY
Resolution
3.26 Å

Loop

Sequence
CAGCG*CGUACG*CCGG
Length
15 nucleotides
Bulged bases
9F1D|1|B5|C|159
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

9F1D|1|B5|C|112
9F1D|1|B5|A|113
9F1D|1|B5|G|114
9F1D|1|B5|C|115
9F1D|1|B5|G|116
*
9F1D|1|B5|C|155
9F1D|1|B5|G|156
9F1D|1|B5|U|157
9F1D|1|B5|A|158
9F1D|1|B5|C|159
9F1D|1|B5|G|160
*
9F1D|1|B5|C|275
9F1D|1|B5|C|276
9F1D|1|B5|G|277
9F1D|1|B5|G|278

Current chains

Chain B5
28S rRNA

Nearby chains

Chain BG
Large ribosomal subunit protein eL8
Chain BL
Large ribosomal subunit protein eL13
Chain BN
Ribosomal protein L15
Chain Bh
60S ribosomal protein L35
Chain Bi
60S ribosomal protein L36

Coloring options:

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