J3_9F1D_014
3D structure
- PDB id
- 9F1D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.26 Å
Loop
- Sequence
- GAC*GCUAAGG*CAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9F1D_014 not in the Motif Atlas
- Homologous match to J3_5TBW_007
- Geometric discrepancy: 0.2557
- The information below is about J3_5TBW_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_28621.3
- Basepair signature
- cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW
- Number of instances in this motif group
- 7
Unit IDs
9F1D|1|B5|G|1908
9F1D|1|B5|A|1909
9F1D|1|B5|C|1910
*
9F1D|1|B5|G|1934
9F1D|1|B5|C|1935
9F1D|1|B5|U|1936
9F1D|1|B5|A|1937
9F1D|1|B5|A|1938
9F1D|1|B5|G|1939
9F1D|1|B5|G|1940
*
9F1D|1|B5|C|1955
9F1D|1|B5|A|1956
9F1D|1|B5|C|1957
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain Bs
- Large ribosomal subunit protein uL10
- Chain Bt
- 60S ribosomal protein L12
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