J3_9F1D_017

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

AGAUG*CAGU*AGGGUGUAAAU

Length

20 nucleotides

Bulged bases

9F1D|1|B5|U|2606

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9F1D|1|B5|A|2394
9F1D|1|B5|G|2395
9F1D|1|B5|A|2396
9F1D|1|B5|U|2397
9F1D|1|B5|G|2398
*
9F1D|1|B5|C|2415
9F1D|1|B5|A|2416
9F1D|1|B5|G|2417
9F1D|1|B5|U|2418
*
9F1D|1|B5|A|2600
9F1D|1|B5|G|2601
9F1D|1|B5|G|2602
9F1D|1|B5|G|2603
9F1D|1|B5|U|2604
9F1D|1|B5|G|2605
9F1D|1|B5|U|2606
9F1D|1|B5|A|2607
9F1D|1|B5|A|2608
9F1D|1|B5|A|2609
9F1D|1|B5|U|2610

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BZ

60S ribosomal protein L27