J3_9F1D_018

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

CGG*CUGAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9F1D_018 not in the Motif Atlas

Geometric match to J3_8VTW_006

Geometric discrepancy: 0.1402

The information below is about J3_8VTW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.4

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

9F1D|1|B5|C|3669
9F1D|1|B5|G|3670
9F1D|1|B5|G|3671
*
9F1D|1|B5|C|3802
9F1D|1|B5|U|3803
9F1D|1|B5|G|3804
9F1D|1|B5|A|3805
9F1D|1|B5|C|3806
*
9F1D|1|B5|G|3914
9F1D|1|B5|G|3915
9F1D|1|B5|A|3916
9F1D|1|B5|C|3917
9F1D|1|B5|A|3918
9F1D|1|B5|G|3919

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BA

Large ribosomal subunit protein uL2

Chain BG

Large ribosomal subunit protein eL8

Chain BN

Ribosomal protein L15