J3_9F1D_025

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

AG*CGC(A2M)AAU*(A2M)GU

Length

12 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9F1D_025 not in the Motif Atlas

Geometric match to J3_4V88_078

Geometric discrepancy: 0.1169

The information below is about J3_4V88_078

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.1

Basepair signature

cWW-F-cWW-F-F-cSW-F-cWW

Number of instances in this motif group

5

Unit IDs

9F1D|1|A2|A|40
9F1D|1|A2|G|41
*
9F1D|1|A2|C|482
9F1D|1|A2|G|483
9F1D|1|A2|C|484
9F1D|1|A2|A2M|485
9F1D|1|A2|A|486
9F1D|1|A2|A|487
9F1D|1|A2|U|488
*
9F1D|1|A2|A2M|513
9F1D|1|A2|G|514
9F1D|1|A2|U|515

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ai

40S ribosomal protein S9

Chain Aw

40S ribosomal protein S23