J3_9F1D_032

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9F1D_032 not in the Motif Atlas

Homologous match to J3_8P9A_081

Geometric discrepancy: 0.1094

The information below is about J3_8P9A_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.4

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

9F1D|1|A2|U|1351
9F1D|1|A2|G|1352
*
9F1D|1|A2|U|1361
9F1D|1|A2|G|1362
9F1D|1|A2|U|1363
9F1D|1|A2|C|1364
*
9F1D|1|A2|G|1376
9F1D|1|A2|A|1377
9F1D|1|A2|U|1378
9F1D|1|A2|A|1379
9F1D|1|A2|A|1380

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AZ

40S ribosomal protein SA

Chain Ab

Small ribosomal subunit protein uS5

Chain Aq

40S ribosomal protein eS17