J3_9F1D_039

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

UU*AGAAG*CGUGGA

Length

13 nucleotides

Bulged bases

9F1D|1|B5|A|1744, 9F1D|1|B5|U|1773

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9F1D_039 not in the Motif Atlas

Homologous match to J3_8P9A_051

Geometric discrepancy: 0.5477

The information below is about J3_8P9A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84137.1

Basepair signature

cWW-cWW-cHW-F-cSS-F-cWW

Number of instances in this motif group

4

Unit IDs

9F1D|1|B5|U|1665
9F1D|1|B5|U|1666
*
9F1D|1|B5|A|1741
9F1D|1|B5|G|1742
9F1D|1|B5|A|1743
9F1D|1|B5|A|1744
9F1D|1|B5|G|1745
*
9F1D|1|B5|C|1771
9F1D|1|B5|G|1772
9F1D|1|B5|U|1773
9F1D|1|B5|G|1774
9F1D|1|B5|G|1775
9F1D|1|B5|A|1776

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BF

Ribosomal Protein uL30

Chain BT

60S ribosomal protein L21

Chain Bb

60S ribosomal protein L29