J3_9F1D_043
3D structure
- PDB id
- 9F1D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.26 Å
Loop
- Sequence
- AGAAG*CC*GAAAAU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9F1D_043 not in the Motif Atlas
- Homologous match to J3_8P9A_058
- Geometric discrepancy: 0.1376
- The information below is about J3_8P9A_058
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_12393.2
- Basepair signature
- cWW-tSH-tHH-F-F-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
9F1D|1|B5|A|2441
9F1D|1|B5|G|2442
9F1D|1|B5|A|2443
9F1D|1|B5|A|2444
9F1D|1|B5|G|2445
*
9F1D|1|B5|C|2580
9F1D|1|B5|C|2581
*
9F1D|1|B5|G|2585
9F1D|1|B5|A|2586
9F1D|1|B5|A|2587
9F1D|1|B5|A|2588
9F1D|1|B5|A|2589
9F1D|1|B5|U|2590
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BA
- Large ribosomal subunit protein uL2
- Chain Bg
- 60S ribosomal protein L34
- Chain Bp
- 60S ribosomal protein L37a
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