J3_9F1D_044
3D structure
- PDB id
- 9F1D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.26 Å
Loop
- Sequence
- (OMG)UC*GCCUCACGAUCC*(OMG)GUGUC
- Length
- 21 nucleotides
- Bulged bases
- 9F1D|1|B5|C|4083, 9F1D|1|B5|U|4120
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9F1D_044 not in the Motif Atlas
- Homologous match to J3_8C3A_056
- Geometric discrepancy: 0.0818
- The information below is about J3_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_27903.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
9F1D|1|B5|OMG|3974
9F1D|1|B5|U|3975
9F1D|1|B5|C|3976
*
9F1D|1|B5|G|4077
9F1D|1|B5|C|4078
9F1D|1|B5|C|4079
9F1D|1|B5|U|4080
9F1D|1|B5|C|4081
9F1D|1|B5|A|4082
9F1D|1|B5|C|4083
9F1D|1|B5|G|4084
9F1D|1|B5|A|4085
9F1D|1|B5|U|4086
9F1D|1|B5|C|4087
9F1D|1|B5|C|4088
*
9F1D|1|B5|OMG|4116
9F1D|1|B5|G|4117
9F1D|1|B5|U|4118
9F1D|1|B5|G|4119
9F1D|1|B5|U|4120
9F1D|1|B5|C|4121
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BQ
- Large ribosomal subunit protein eL18
- Chain BT
- 60S ribosomal protein L21
- Chain Ba
- 60S ribosomal protein L27a
- Chain Bo
- Large ribosomal subunit protein eL42
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