J3_9F1D_045

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

GUUG*CCUUC*GCACCGCACGUUC

Length

22 nucleotides

Bulged bases

9F1D|1|B5|U|4621, 9F1D|1|B5|A|4677, 9F1D|1|B5|C|4679, 9F1D|1|B5|A|4682, 9F1D|1|B5|C|4683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9F1D|1|B5|G|4498
9F1D|1|B5|U|4499
9F1D|1|B5|U|4500
9F1D|1|B5|G|4501
*
9F1D|1|B5|C|4618
9F1D|1|B5|C|4619
9F1D|1|B5|U|4620
9F1D|1|B5|U|4621
9F1D|1|B5|C|4622
*
9F1D|1|B5|G|4675
9F1D|1|B5|C|4676
9F1D|1|B5|A|4677
9F1D|1|B5|C|4678
9F1D|1|B5|C|4679
9F1D|1|B5|G|4680
9F1D|1|B5|C|4681
9F1D|1|B5|A|4682
9F1D|1|B5|C|4683
9F1D|1|B5|G|4684
9F1D|1|B5|U|4685
9F1D|1|B5|U|4686
9F1D|1|B5|C|4687

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BE

60S ribosomal protein L6

Chain BM

60S ribosomal protein L14

Chain BO

Large ribosomal subunit protein uL13

Chain Bf

60S ribosomal protein L35a