J3_9F58_003
3D structure
- PDB id
- 9F58 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Gcn2 dimer bound to the 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUUG*CGAUAGCGAACAAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 9F58|1|4|U|23, 9F58|1|a|U|343, 9F58|1|a|A|351
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9F58_003 not in the Motif Atlas
- Geometric match to J3_8P9A_045
- Geometric discrepancy: 0.0492
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
9F58|1|4|C|21
9F58|1|4|U|22
9F58|1|4|U|23
9F58|1|4|G|24
*
9F58|1|a|C|340
9F58|1|a|G|341
9F58|1|a|A|342
9F58|1|a|U|343
9F58|1|a|A|344
9F58|1|a|G|345
9F58|1|a|C|346
9F58|1|a|G|347
9F58|1|a|A|348
9F58|1|a|A|349
9F58|1|a|C|350
9F58|1|a|A|351
9F58|1|a|A|352
9F58|1|a|G|353
9F58|1|a|U|354
9F58|1|a|A|355
9F58|1|a|C|356
*
9F58|1|a|G|363
9F58|1|a|G|364
9F58|1|a|A|365
9F58|1|a|A|366
9F58|1|a|A|367
9F58|1|a|G|368
Current chains
- Chain 4
- 5.8S rRNA
- Chain a
- 25S rRNA
Nearby chains
- Chain 3
- 60S ribosomal protein L4-A
- Chain J
- 60S ribosomal protein L26-A
- Chain V
- 60S ribosomal protein L37-A
- Chain X
- 60S ribosomal protein L39
Coloring options: