J3_9F58_006
3D structure
- PDB id
- 9F58 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Gcn2 dimer bound to the 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAAAUUUGAAAU*AGUUGUAAUUUGGAG*CGAAG
- Length
- 32 nucleotides
- Bulged bases
- 9F58|1|a|U|117, 9F58|1|a|G|120, 9F58|1|a|A|121, 9F58|1|a|U|147, 9F58|1|a|G|156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9F58|1|a|C|113
9F58|1|a|A|114
9F58|1|a|A|115
9F58|1|a|A|116
9F58|1|a|U|117
9F58|1|a|U|118
9F58|1|a|U|119
9F58|1|a|G|120
9F58|1|a|A|121
9F58|1|a|A|122
9F58|1|a|A|123
9F58|1|a|U|124
*
9F58|1|a|A|144
9F58|1|a|G|145
9F58|1|a|U|146
9F58|1|a|U|147
9F58|1|a|G|148
9F58|1|a|U|149
9F58|1|a|A|150
9F58|1|a|A|151
9F58|1|a|U|152
9F58|1|a|U|153
9F58|1|a|U|154
9F58|1|a|G|155
9F58|1|a|G|156
9F58|1|a|A|157
9F58|1|a|G|158
*
9F58|1|a|C|263
9F58|1|a|G|264
9F58|1|a|A|265
9F58|1|a|A|266
9F58|1|a|G|267
Current chains
- Chain a
- 25S rRNA
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain T
- 60S ribosomal protein L35-A
- Chain U
- 60S ribosomal protein L36-A
- Chain h
- 60S ribosomal protein L8-A
- Chain m
- 60S ribosomal protein L13-A
- Chain o
- 60S ribosomal protein L15-A
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