J3_9F58_017

3D structure

PDB id

9F58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Gcn2 dimer bound to the 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CA*UAACU*AG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9F58_017 not in the Motif Atlas

Homologous match to J3_8CRE_017

Geometric discrepancy: 0.1253

The information below is about J3_8CRE_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_75962.2

Basepair signature

cWW-cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

9F58|1|a|C|1631
9F58|1|a|A|1632
*
9F58|1|a|U|1641
9F58|1|a|A|1642
9F58|1|a|A|1643
9F58|1|a|C|1644
9F58|1|a|U|1645
*
9F58|1|a|A|1810
9F58|1|a|G|1811

Current chains

Chain a

25S rRNA

Nearby chains

Chain K

60S ribosomal protein L27-A

Chain P

Large ribosomal subunit protein eL41B

Chain S

60S ribosomal protein L34-A