J3_9F58_025

3D structure

PDB id

9F58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Gcn2 dimer bound to the 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAU*AGAUG*CUG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9F58_025 not in the Motif Atlas

Homologous match to J3_8P9A_065

Geometric discrepancy: 0.1151

The information below is about J3_8P9A_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_81015.1

Basepair signature

cWW-cWW-F-cWW-F-cWW-F

Number of instances in this motif group

1

Unit IDs

9F58|1|a|C|3298
9F58|1|a|A|3299
9F58|1|a|U|3300
*
9F58|1|a|A|3314
9F58|1|a|G|3315
9F58|1|a|A|3316
9F58|1|a|U|3317
9F58|1|a|G|3318
*
9F58|1|a|C|3388
9F58|1|a|U|3389
9F58|1|a|G|3390

Current chains

Chain a

25S rRNA

Nearby chains

Chain O

60S ribosomal protein L31-A

Chain d

60S ribosomal protein L3

Chain q

60S ribosomal protein L17-A