J3_9F9S_026
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AC*GAUACGU*AAUCU
- Length
- 14 nucleotides
- Bulged bases
- 9F9S|1|L2|U|60, 9F9S|1|L2|C|62
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9F9S_026 not in the Motif Atlas
- Homologous match to J3_8P9A_067
- Geometric discrepancy: 0.0554
- The information below is about J3_8P9A_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01004.1
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
9F9S|1|L2|A|44
9F9S|1|L2|C|45
*
9F9S|1|L2|G|58
9F9S|1|L2|A|59
9F9S|1|L2|U|60
9F9S|1|L2|A|61
9F9S|1|L2|C|62
9F9S|1|L2|G|63
9F9S|1|L2|U|64
*
9F9S|1|L2|A|96
9F9S|1|L2|A|97
9F9S|1|L2|U|98
9F9S|1|L2|C|99
9F9S|1|L2|U|100
Current chains
- Chain L2
- Saccharomyces cerevisiae S288C 5.8S ribosomal RNA
Nearby chains
- Chain Lf
- 60S ribosomal protein L39
- Chain Lh
- 60S ribosomal protein L37-A
- Chain Lj
- 60S ribosomal protein L35-A
- Chain Lt
- 60S ribosomal protein L25
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