J3_9F9S_042
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AGAUGG*CGUUUCAAAGG*CACCAU
- Length
- 23 nucleotides
- Bulged bases
- 9F9S|1|M1|C|1556, 9F9S|1|M1|A|1558, 9F9S|1|M1|A|1580, 9F9S|1|M1|C|1581
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9F9S|1|M1|A|1537
9F9S|1|M1|G|1538
9F9S|1|M1|A|1539
9F9S|1|M1|U|1540
9F9S|1|M1|G|1541
9F9S|1|M1|G|1542
*
9F9S|1|M1|C|1551
9F9S|1|M1|G|1552
9F9S|1|M1|U|1553
9F9S|1|M1|U|1554
9F9S|1|M1|U|1555
9F9S|1|M1|C|1556
9F9S|1|M1|A|1557
9F9S|1|M1|A|1558
9F9S|1|M1|A|1559
9F9S|1|M1|G|1560
9F9S|1|M1|G|1561
*
9F9S|1|M1|C|1579
9F9S|1|M1|A|1580
9F9S|1|M1|C|1581
9F9S|1|M1|C|1582
9F9S|1|M1|A|1583
9F9S|1|M1|U|1584
Current chains
- Chain M1
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications
Nearby chains
- Chain M2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain MC
- 60S ribosomal protein L8-A
- Chain MI
- 60S ribosomal protein L15-A
- Chain Mh
- 60S ribosomal protein L37-A
- Chain Mt
- 60S ribosomal protein L25
- Chain Mw
- 60S ribosomal protein L2-A
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