J3_9F9S_047
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUC*GCCUAUCGAUCC*(OMG)GUGCC
- Length
- 21 nucleotides
- Bulged bases
- 9F9S|1|M1|C|2760, 9F9S|1|M1|C|2797
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9F9S_047 not in the Motif Atlas
- Homologous match to J3_8P9A_061
- Geometric discrepancy: 0.0546
- The information below is about J3_8P9A_061
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_04772.1
- Basepair signature
- cWW-F-tHH-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
9F9S|1|M1|G|2651
9F9S|1|M1|U|2652
9F9S|1|M1|C|2653
*
9F9S|1|M1|G|2754
9F9S|1|M1|C|2755
9F9S|1|M1|C|2756
9F9S|1|M1|U|2757
9F9S|1|M1|A|2758
9F9S|1|M1|U|2759
9F9S|1|M1|C|2760
9F9S|1|M1|G|2761
9F9S|1|M1|A|2762
9F9S|1|M1|U|2763
9F9S|1|M1|C|2764
9F9S|1|M1|C|2765
*
9F9S|1|M1|OMG|2793
9F9S|1|M1|G|2794
9F9S|1|M1|U|2795
9F9S|1|M1|G|2796
9F9S|1|M1|C|2797
9F9S|1|M1|C|2798
Current chains
- Chain M1
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications
Nearby chains
- Chain DQ
- Transfer RNA; tRNA
- Chain ML
- 60S ribosomal protein L18-A
- Chain MO
- 60S ribosomal protein L21-A
- Chain Mc
- 60S ribosomal protein L42-A
- Chain Mq
- 60S ribosomal protein L28
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