J3_9F9S_048
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUC*GAA*UAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 9F9S|1|M1|A|2703, 9F9S|1|M1|A|2705
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9F9S_048 not in the Motif Atlas
- Homologous match to J3_8P9A_062
- Geometric discrepancy: 0.0618
- The information below is about J3_8P9A_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_05327.1
- Basepair signature
- cWW-tWH-tWW-cWW-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
9F9S|1|M1|C|2664
9F9S|1|M1|U|2665
9F9S|1|M1|C|2666
*
9F9S|1|M1|G|2690
9F9S|1|M1|A|2691
9F9S|1|M1|A|2692
*
9F9S|1|M1|U|2701
9F9S|1|M1|A|2702
9F9S|1|M1|A|2703
9F9S|1|M1|A|2704
9F9S|1|M1|A|2705
9F9S|1|M1|G|2706
Current chains
- Chain M1
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications
Nearby chains
- Chain M3
- 5S ribosomal RNA; 5S rRNA
- Chain MF
- 60S ribosomal protein L11-A
- Chain MO
- 60S ribosomal protein L21-A
- Chain Mz
- 60S ribosomal protein L5
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