J3_9F9S_050
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UAGAUG*CAUAGCAGG*CGAAUUGCAAUGUCA
- Length
- 30 nucleotides
- Bulged bases
- 9F9S|1|M1|A|3172, 9F9S|1|M1|G|3173, 9F9S|1|M1|A|3215, 9F9S|1|M1|G|3216, 9F9S|1|M1|G|3219, 9F9S|1|M1|A|3268, 9F9S|1|M1|U|3270, 9F9S|1|M1|C|3272
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9F9S_050 not in the Motif Atlas
- Homologous match to J3_8P9A_064
- Geometric discrepancy: 0.2016
- The information below is about J3_8P9A_064
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_03190.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-cWW-F-F-F-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
9F9S|1|M1|U|3171
9F9S|1|M1|A|3172
9F9S|1|M1|G|3173
9F9S|1|M1|A|3174
9F9S|1|M1|U|3175
9F9S|1|M1|G|3176
*
9F9S|1|M1|C|3212
9F9S|1|M1|A|3213
9F9S|1|M1|U|3214
9F9S|1|M1|A|3215
9F9S|1|M1|G|3216
9F9S|1|M1|C|3217
9F9S|1|M1|A|3218
9F9S|1|M1|G|3219
9F9S|1|M1|G|3220
*
9F9S|1|M1|C|3265
9F9S|1|M1|G|3266
9F9S|1|M1|A|3267
9F9S|1|M1|A|3268
9F9S|1|M1|U|3269
9F9S|1|M1|U|3270
9F9S|1|M1|G|3271
9F9S|1|M1|C|3272
9F9S|1|M1|A|3273
9F9S|1|M1|A|3274
9F9S|1|M1|U|3275
9F9S|1|M1|G|3276
9F9S|1|M1|U|3277
9F9S|1|M1|C|3278
9F9S|1|M1|A|3279
Current chains
- Chain M1
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications
Nearby chains
- Chain MA
- 60S ribosomal protein L6-A
- Chain MH
- 60S ribosomal protein L14-A
- Chain MJ
- 60S ribosomal protein L16-A
- Chain Ml
- 60S ribosomal protein L33-A
Coloring options: