J3_9F9S_056

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCUUUG*CAU

Length

26 nucleotides

Bulged bases

9F9S|1|R1|U|238, 9F9S|1|R1|C|239, 9F9S|1|R1|U|240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9F9S|1|R1|A|213
9F9S|1|R1|G|214
9F9S|1|R1|A|215
9F9S|1|R1|U|216
9F9S|1|R1|A|217
9F9S|1|R1|A|218
9F9S|1|R1|A|219
9F9S|1|R1|A|220
9F9S|1|R1|A|221
9F9S|1|R1|A|222
9F9S|1|R1|U|223
9F9S|1|R1|C|224
9F9S|1|R1|A|225
9F9S|1|R1|A|226
9F9S|1|R1|U|227
9F9S|1|R1|G|228
*
9F9S|1|R1|C|237
9F9S|1|R1|U|238
9F9S|1|R1|C|239
9F9S|1|R1|U|240
9F9S|1|R1|U|241
9F9S|1|R1|U|242
9F9S|1|R1|G|243
*
9F9S|1|R1|C|250
9F9S|1|R1|A|251
9F9S|1|R1|U|252

Current chains

Chain R1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)

Nearby chains

Chain Re

40S ribosomal protein S4-A

Chain Rg

40S ribosomal protein S6-A

Chain Ri

40S ribosomal protein S8-A

Chain Rl

40S ribosomal protein S11-A