J3_9F9S_058
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UGA*UAAUAG*CAUUA
- Length
- 14 nucleotides
- Bulged bases
- 9F9S|1|R1|U|864
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9F9S_058 not in the Motif Atlas
- Homologous match to J3_8P9A_072
- Geometric discrepancy: 0.0874
- The information below is about J3_8P9A_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.5
- Basepair signature
- cWW-F-cWW-cWW-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
9F9S|1|R1|U|633
9F9S|1|R1|G|634
9F9S|1|R1|A|635
*
9F9S|1|R1|U|861
9F9S|1|R1|A|862
9F9S|1|R1|A|863
9F9S|1|R1|U|864
9F9S|1|R1|A|865
9F9S|1|R1|G|866
*
9F9S|1|R1|C|962
9F9S|1|R1|A|963
9F9S|1|R1|U|964
9F9S|1|R1|U|965
9F9S|1|R1|A|966
Current chains
- Chain R1
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)
Nearby chains
- Chain RB
- 40S ribosomal protein S27-A
- Chain Rh
- 40S ribosomal protein S7-A
- Chain Rl
- 40S ribosomal protein S11-A
- Chain Rn
- 40S ribosomal protein S13
- Chain Rw
- 40S ribosomal protein S22-A
- Chain Rx
- 40S ribosomal protein S23-A
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