J3_9F9S_059

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGAG*CAG*UCGAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9F9S_059 not in the Motif Atlas

Homologous match to J3_8P9A_073

Geometric discrepancy: 0.097

The information below is about J3_8P9A_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97642.2

Basepair signature

cWW-tSH-F-F-cWW-F-tWW-cWW

Number of instances in this motif group

3

Unit IDs

9F9S|1|R1|A|760
9F9S|1|R1|G|761
9F9S|1|R1|A|762
9F9S|1|R1|G|763
*
9F9S|1|R1|C|773
9F9S|1|R1|A|774
9F9S|1|R1|G|775
*
9F9S|1|R1|U|785
9F9S|1|R1|C|786
9F9S|1|R1|G|787
9F9S|1|R1|A|788
9F9S|1|R1|A|789
9F9S|1|R1|U|790

Current chains

Chain R1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)

Nearby chains

Chain Re

40S ribosomal protein S4-A

Chain Rj

40S ribosomal protein S9-A

Chain Ry

40S ribosomal protein S24-A