J3_9F9S_064
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUUAAUUU*GGGGAAACUCAC*GGCCG
- Length
- 25 nucleotides
- Bulged bases
- 9F9S|1|R1|G|1199, 9F9S|1|R1|G|1201, 9F9S|1|R1|A|1203
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9F9S_064 not in the Motif Atlas
- Homologous match to J3_8C3A_040
- Geometric discrepancy: 0.0597
- The information below is about J3_8C3A_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.3
- Basepair signature
- cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
9F9S|1|R1|C|1180
9F9S|1|R1|U|1181
9F9S|1|R1|U|1182
9F9S|1|R1|A|1183
9F9S|1|R1|A|1184
9F9S|1|R1|U|1185
9F9S|1|R1|U|1186
9F9S|1|R1|U|1187
*
9F9S|1|R1|G|1198
9F9S|1|R1|G|1199
9F9S|1|R1|G|1200
9F9S|1|R1|G|1201
9F9S|1|R1|A|1202
9F9S|1|R1|A|1203
9F9S|1|R1|A|1204
9F9S|1|R1|C|1205
9F9S|1|R1|U|1206
9F9S|1|R1|C|1207
9F9S|1|R1|A|1208
9F9S|1|R1|C|1209
*
9F9S|1|R1|G|1454
9F9S|1|R1|G|1455
9F9S|1|R1|C|1456
9F9S|1|R1|C|1457
9F9S|1|R1|G|1458
Current chains
- Chain R1
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)
Nearby chains
- Chain DP
- Transfer RNA; tRNA
- Chain RD
- Small ribosomal subunit protein uS14A
- Chain RF
- Ubiquitin
- Chain Rp
- 40S ribosomal protein S15
- Chain Rs
- 40S ribosomal protein S18-A
- Chain Ru
- Small ribosomal subunit protein uS10
Coloring options: