J3_9FMD_001
3D structure
- PDB id
- 9FMD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Integrative model of the human post-catalytic spliceosome (P-complex)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GGCCUUUUGG*CAU*ACGCAAAUUC
- Length
- 23 nucleotides
- Bulged bases
- 9FMD|1|2|U|15, 9FMD|1|2|U|17, 9FMD|1|2|U|18, 9FMD|1|6|C|79, 9FMD|1|6|C|81, 9FMD|1|6|A|84
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9FMD|1|2|G|11
9FMD|1|2|G|12
9FMD|1|2|C|13
9FMD|1|2|C|14
9FMD|1|2|U|15
9FMD|1|2|U|16
9FMD|1|2|U|17
9FMD|1|2|U|18
9FMD|1|2|G|19
9FMD|1|2|G|20
*
9FMD|1|6|C|55
9FMD|1|6|A|56
9FMD|1|6|U|57
*
9FMD|1|6|A|78
9FMD|1|6|C|79
9FMD|1|6|G|80
9FMD|1|6|C|81
9FMD|1|6|A|82
9FMD|1|6|A|83
9FMD|1|6|A|84
9FMD|1|6|U|85
9FMD|1|6|U|86
9FMD|1|6|C|87
Current chains
- Chain 2
- U2 snRNA
- Chain 6
- U6 snRNA
Nearby chains
- Chain 5
- U5 spliceosomal RNA; U5 snRNA
- Chain A
- Pre-mRNA-processing-splicing factor 8
- Chain EX
- Exon
- Chain J
- Crooked neck-like protein 1
- Chain L
- Cell division cycle 5-like protein
- Chain M
- Pre-mRNA-splicing factor SYF2
- Chain P
- Spliceosome-associated protein CWC15 homolog
- Chain R
- SNW domain-containing protein 1
- Chain T
- Pleiotropic regulator 1
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