J3_9FN2_001

3D structure

PDB id

9FN2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the alkyltransferase ribozyme SAMURI co-crystallized with SAM

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CAUGGC*GUC*G(A1IEA)G

Length

12 nucleotides

Bulged bases

9FN2|1|A|A1IEA|52

QA status

Modified nucleotides: A1IEA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_93902.1

Basepair signature

cWW-F-cWW-F-tWS-F-cWW

Number of instances in this motif group

2

Unit IDs

9FN2|1|A|C|6
9FN2|1|A|A|7
9FN2|1|A|U|8
9FN2|1|A|G|9
9FN2|1|A|G|10
9FN2|1|A|C|11
*
9FN2|1|A|G|36
9FN2|1|A|U|37
9FN2|1|A|C|38
*
9FN2|1|A|G|51
9FN2|1|A|A1IEA|52
9FN2|1|A|G|53

Current chains

Chain A

SAMURI-SAM

Nearby chains

Chain B

SAMURI-SAM