J3_9G06_007

3D structure

PDB id

9G06 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S-IF1-IF3-mRNA-fMet-tRNA-GE81112A complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9G06_007 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.0556

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.1

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

9G06|1|B|C|936
9G06|1|B|A|937
9G06|1|B|A|938
9G06|1|B|G|939
*
9G06|1|B|C|1344
9G06|1|B|U|1345
9G06|1|B|A|1346
9G06|1|B|G|1347
9G06|1|B|U|1348
9G06|1|B|A|1349
9G06|1|B|A|1350
*
9G06|1|B|U|1372
9G06|1|B|G|1373
9G06|1|B|A|1374
9G06|1|B|A|1375
9G06|1|B|U|1376
9G06|1|B|A|1377
9G06|1|B|C|1378
9G06|1|B|G|1379

Current chains

Chain B

16S ribosomal RNA

Nearby chains

Chain G

Small ribosomal subunit protein uS7

Chain b

Small ribosomal subunit protein uS9