J3_9G06_011

3D structure

PDB id

9G06 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S-IF1-IF3-mRNA-fMet-tRNA-GE81112A complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

9G06|1|B|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9G06_011 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.1187

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

9G06|1|B|C|990
9G06|1|B|U|991
9G06|1|B|U|992
9G06|1|B|G|993
9G06|1|B|A|994
9G06|1|B|C|995
9G06|1|B|A|996
9G06|1|B|U|997
*
9G06|1|B|A|1044
9G06|1|B|C|1045
9G06|1|B|A|1046
9G06|1|B|G|1047
*
9G06|1|B|C|1210
9G06|1|B|U|1211
9G06|1|B|U|1212
9G06|1|B|A|1213
9G06|1|B|C|1214
9G06|1|B|G|1215

Current chains

Chain B

16S ribosomal RNA

Nearby chains

Chain N

Small ribosomal subunit protein uS14