J3_9G06_016
3D structure
- PDB id
- 9G06 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of 30S-IF1-IF3-mRNA-fMet-tRNA-GE81112A complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.85 Å
Loop
- Sequence
- UAU*AGACUGC*GAGGAAGGUG
- Length
- 20 nucleotides
- Bulged bases
- 9G06|1|B|U|1183
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9G06_016 not in the Motif Atlas
- Homologous match to J3_5J7L_054
- Geometric discrepancy: 0.0937
- The information below is about J3_5J7L_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17791.2
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
9G06|1|B|U|1116
9G06|1|B|A|1117
9G06|1|B|U|1118
*
9G06|1|B|A|1155
9G06|1|B|G|1156
9G06|1|B|A|1157
9G06|1|B|C|1158
9G06|1|B|U|1159
9G06|1|B|G|1160
9G06|1|B|C|1161
*
9G06|1|B|G|1175
9G06|1|B|A|1176
9G06|1|B|G|1177
9G06|1|B|G|1178
9G06|1|B|A|1179
9G06|1|B|A|1180
9G06|1|B|G|1181
9G06|1|B|G|1182
9G06|1|B|U|1183
9G06|1|B|G|1184
Current chains
- Chain B
- 16S ribosomal RNA
Nearby chains
- Chain N
- Small ribosomal subunit protein uS14
- Chain b
- Small ribosomal subunit protein uS9
- Chain c
- Small ribosomal subunit protein uS10
Coloring options: