J3_9G1Z_004
3D structure
- PDB id
- 9G1Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAUAGCGAACAAGUAC*GGAAAG*CUUG
- Length
- 27 nucleotides
- Bulged bases
- 9G1Z|1|1|U|343, 9G1Z|1|1|A|351, 9G1Z|1|4|U|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9G1Z_004 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.0484
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
9G1Z|1|1|C|340
9G1Z|1|1|G|341
9G1Z|1|1|A|342
9G1Z|1|1|U|343
9G1Z|1|1|A|344
9G1Z|1|1|G|345
9G1Z|1|1|C|346
9G1Z|1|1|G|347
9G1Z|1|1|A|348
9G1Z|1|1|A|349
9G1Z|1|1|C|350
9G1Z|1|1|A|351
9G1Z|1|1|A|352
9G1Z|1|1|G|353
9G1Z|1|1|U|354
9G1Z|1|1|A|355
9G1Z|1|1|C|356
*
9G1Z|1|1|G|363
9G1Z|1|1|G|364
9G1Z|1|1|A|365
9G1Z|1|1|A|366
9G1Z|1|1|A|367
9G1Z|1|1|G|368
*
9G1Z|1|4|C|21
9G1Z|1|4|U|22
9G1Z|1|4|U|23
9G1Z|1|4|G|24
Current chains
- Chain 1
- 25S rRNA
- Chain 4
- 5.8S rRNA
Nearby chains
- Chain 9
- Ribosomal 60S subunit protein L26B
- Chain AK
- Ribosomal protein L37
- Chain AM
- 60S ribosomal protein L39
- Chain l
- Ribosomal 60S subunit protein L4B
Coloring options: