J3_9G1Z_012

3D structure

PDB id

9G1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

9G1Z|1|1|C|1253, 9G1Z|1|1|U|1254, 9G1Z|1|1|A|1255, 9G1Z|1|1|A|1274

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9G1Z_012 not in the Motif Atlas

Homologous match to J3_8CRE_012

Geometric discrepancy: 0.4758

The information below is about J3_8CRE_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

9G1Z|1|1|G|1226
9G1Z|1|1|A|1227
9G1Z|1|1|C|1228
*
9G1Z|1|1|G|1252
9G1Z|1|1|C|1253
9G1Z|1|1|U|1254
9G1Z|1|1|A|1255
9G1Z|1|1|A|1256
9G1Z|1|1|G|1257
9G1Z|1|1|G|1258
*
9G1Z|1|1|C|1273
9G1Z|1|1|A|1274
9G1Z|1|1|C|1275

Current chains

Chain 1

25S rRNA

Nearby chains