J3_9G1Z_014
3D structure
- PDB id
- 9G1Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAAA*UCAUAAC*GUC
- Length
- 14 nucleotides
- Bulged bases
- 9G1Z|1|1|U|1836, 9G1Z|1|1|A|1837
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9G1Z_014 not in the Motif Atlas
- Homologous match to J3_8CRE_014
- Geometric discrepancy: 0.0586
- The information below is about J3_8CRE_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_19545.2
- Basepair signature
- cWW-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 6
Unit IDs
9G1Z|1|1|G|1484
9G1Z|1|1|A|1485
9G1Z|1|1|A|1486
9G1Z|1|1|A|1487
*
9G1Z|1|1|U|1833
9G1Z|1|1|C|1834
9G1Z|1|1|A|1835
9G1Z|1|1|U|1836
9G1Z|1|1|A|1837
9G1Z|1|1|A|1838
9G1Z|1|1|C|1839
*
9G1Z|1|1|G|1848
9G1Z|1|1|U|1849
9G1Z|1|1|C|1850
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AH
- Large ribosomal subunit protein eL34
- Chain AK
- Ribosomal protein L37
- Chain AM
- 60S ribosomal protein L39
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