J3_9G1Z_018
3D structure
- PDB id
- 9G1Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AGACG*UC*GAAAAU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9G1Z_018 not in the Motif Atlas
- Homologous match to J3_8CRE_018
- Geometric discrepancy: 0.0708
- The information below is about J3_8CRE_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_12393.2
- Basepair signature
- cWW-tSH-tHH-F-F-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
9G1Z|1|1|A|1650
9G1Z|1|1|G|1651
9G1Z|1|1|A|1652
9G1Z|1|1|C|1653
9G1Z|1|1|G|1654
*
9G1Z|1|1|U|1787
9G1Z|1|1|C|1788
*
9G1Z|1|1|G|1792
9G1Z|1|1|A|1793
9G1Z|1|1|A|1794
9G1Z|1|1|A|1795
9G1Z|1|1|A|1796
9G1Z|1|1|U|1797
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain AH
- Large ribosomal subunit protein eL34
- Chain AQ
- Ribosomal 60S subunit protein L43A
- Chain j
- Ribosomal 60S subunit protein L2A
- Chain p
- 60S ribosomal protein L8
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