J3_9G1Z_020
3D structure
- PDB id
- 9G1Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AGCU*ACGUUCUAGCAUUAAG*CGAU
- Length
- 24 nucleotides
- Bulged bases
- 9G1Z|1|1|G|2527, 9G1Z|1|1|U|2528, 9G1Z|1|1|U|2529, 9G1Z|1|1|C|2530, 9G1Z|1|1|U|2531, 9G1Z|1|1|A|2532
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9G1Z_020 not in the Motif Atlas
- Homologous match to J3_8CRE_020
- Geometric discrepancy: 0.0676
- The information below is about J3_8CRE_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_28639.1
- Basepair signature
- cWW-tSS-F-cWW-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
9G1Z|1|1|A|2507
9G1Z|1|1|G|2508
9G1Z|1|1|C|2509
9G1Z|1|1|U|2510
*
9G1Z|1|1|A|2525
9G1Z|1|1|C|2526
9G1Z|1|1|G|2527
9G1Z|1|1|U|2528
9G1Z|1|1|U|2529
9G1Z|1|1|C|2530
9G1Z|1|1|U|2531
9G1Z|1|1|A|2532
9G1Z|1|1|G|2533
9G1Z|1|1|C|2534
9G1Z|1|1|A|2535
9G1Z|1|1|U|2536
9G1Z|1|1|U|2537
9G1Z|1|1|A|2538
9G1Z|1|1|A|2539
9G1Z|1|1|G|2540
*
9G1Z|1|1|C|2550
9G1Z|1|1|G|2551
9G1Z|1|1|A|2552
9G1Z|1|1|U|2553
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain AA
- 60S ribosomal protein L27
- Chain AD
- Ribosomal 60S subunit protein L30
- Chain AH
- Large ribosomal subunit protein eL34
- Chain AQ
- Ribosomal 60S subunit protein L43A
- Chain j
- Ribosomal 60S subunit protein L2A
- Chain p
- 60S ribosomal protein L8
Coloring options: