J3_9G1Z_036
3D structure
- PDB id
- 9G1Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUUAAUUU*GGGGAAACUCAC*GGCCG
- Length
- 25 nucleotides
- Bulged bases
- 9G1Z|1|A|G|1184, 9G1Z|1|A|G|1186, 9G1Z|1|A|A|1188
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9G1Z_036 not in the Motif Atlas
- Homologous match to J3_8CRE_080
- Geometric discrepancy: 0.068
- The information below is about J3_8CRE_080
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9G1Z|1|A|C|1165
9G1Z|1|A|U|1166
9G1Z|1|A|U|1167
9G1Z|1|A|A|1168
9G1Z|1|A|A|1169
9G1Z|1|A|U|1170
9G1Z|1|A|U|1171
9G1Z|1|A|U|1172
*
9G1Z|1|A|G|1183
9G1Z|1|A|G|1184
9G1Z|1|A|G|1185
9G1Z|1|A|G|1186
9G1Z|1|A|A|1187
9G1Z|1|A|A|1188
9G1Z|1|A|A|1189
9G1Z|1|A|C|1190
9G1Z|1|A|U|1191
9G1Z|1|A|C|1192
9G1Z|1|A|A|1193
9G1Z|1|A|C|1194
*
9G1Z|1|A|G|1440
9G1Z|1|A|G|1441
9G1Z|1|A|C|1442
9G1Z|1|A|C|1443
9G1Z|1|A|G|1444
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain Q
- Ribosomal 40S subunit protein S15
- Chain T
- Ribosomal 40S subunit protein S18B
- Chain V
- Ribosomal 40S subunit protein S20
- Chain e
- Ribosomal 40S subunit protein S29A
- Chain g
- Ubiquitin-ribosomal 40S subunit protein S31 fusion protein
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