J3_9G1Z_037
3D structure
- PDB id
- 9G1Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CCAGAC*GGGUG*UUAGACG
- Length
- 18 nucleotides
- Bulged bases
- 9G1Z|1|A|A|1202, 9G1Z|1|A|G|1431, 9G1Z|1|A|C|1433
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9G1Z_037 not in the Motif Atlas
- Homologous match to J3_8CRE_081
- Geometric discrepancy: 0.0747
- The information below is about J3_8CRE_081
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_87797.2
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 3
Unit IDs
9G1Z|1|A|C|1200
9G1Z|1|A|C|1201
9G1Z|1|A|A|1202
9G1Z|1|A|G|1203
9G1Z|1|A|A|1204
9G1Z|1|A|C|1205
*
9G1Z|1|A|G|1248
9G1Z|1|A|G|1249
9G1Z|1|A|G|1250
9G1Z|1|A|U|1251
9G1Z|1|A|G|1252
*
9G1Z|1|A|U|1428
9G1Z|1|A|U|1429
9G1Z|1|A|A|1430
9G1Z|1|A|G|1431
9G1Z|1|A|A|1432
9G1Z|1|A|C|1433
9G1Z|1|A|G|1434
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain L
- Ribosomal 40S subunit protein S10A
- Chain e
- Ribosomal 40S subunit protein S29A
- Chain g
- Ubiquitin-ribosomal 40S subunit protein S31 fusion protein
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