J3_9G1Z_038
3D structure
- PDB id
- 9G1Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUCUUAG*CGAGAC*GCAAUAA
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9G1Z_038 not in the Motif Atlas
- Homologous match to J3_8CRE_082
- Geometric discrepancy: 0.0822
- The information below is about J3_8CRE_082
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_04315.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F-F-cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
9G1Z|1|A|U|1267
9G1Z|1|A|U|1268
9G1Z|1|A|C|1269
9G1Z|1|A|U|1270
9G1Z|1|A|U|1271
9G1Z|1|A|A|1272
9G1Z|1|A|G|1273
*
9G1Z|1|A|C|1312
9G1Z|1|A|G|1313
9G1Z|1|A|A|1314
9G1Z|1|A|G|1315
9G1Z|1|A|A|1316
9G1Z|1|A|C|1317
*
9G1Z|1|A|G|1405
9G1Z|1|A|C|1406
9G1Z|1|A|A|1407
9G1Z|1|A|A|1408
9G1Z|1|A|U|1409
9G1Z|1|A|A|1410
9G1Z|1|A|A|1411
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain D
- Ribosomal 40S subunit protein S2
- Chain E
- Ribosomal 40S subunit protein S3
- Chain R
- Ribosomal 40S subunit protein S16A
- Chain S
- Ribosomal 40S subunit protein S17B
- Chain V
- Ribosomal 40S subunit protein S20
- Chain e
- Ribosomal 40S subunit protein S29A
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