J3_9G33_003

3D structure

PDB id

9G33 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stalled 90S - Utp23-Krr1-deltaC3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CACUG*CGUGC*GAG

Length

13 nucleotides

Bulged bases

9G33|1|D3|G|1536

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9G33|1|D3|C|1470
9G33|1|D3|A|1471
9G33|1|D3|C|1472
9G33|1|D3|U|1473
9G33|1|D3|G|1474
*
9G33|1|D3|C|1533
9G33|1|D3|G|1534
9G33|1|D3|U|1535
9G33|1|D3|G|1536
9G33|1|D3|C|1537
*
9G33|1|D3|G|1572
9G33|1|D3|A|1573
9G33|1|D3|G|1574

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DF

40S ribosomal protein S5

Chain DS

40S ribosomal protein S18-A

Chain JG

Ribosomal RNA small subunit methyltransferase NEP1

Chain UB

Nucleolar complex protein 14

Chain UO

U3 small nucleolar RNA-associated protein 15