J3_9G6J_001
3D structure
- PDB id
- 9G6J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.15 Å
Loop
- Sequence
- CAAAUUUGAAA*UAAUUUGAAG*CGACG
- Length
- 26 nucleotides
- Bulged bases
- 9G6J|1|1|U|116, 9G6J|1|1|G|119, 9G6J|1|1|A|120, 9G6J|1|1|A|155
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9G6J_001 not in the Motif Atlas
- Homologous match to J3_8CRE_001
- Geometric discrepancy: 0.0558
- The information below is about J3_8CRE_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_19664.1
- Basepair signature
- cWW-tHW-F-F-F-F-tHS-F-cWW-F-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
9G6J|1|1|C|112
9G6J|1|1|A|113
9G6J|1|1|A|114
9G6J|1|1|A|115
9G6J|1|1|U|116
9G6J|1|1|U|117
9G6J|1|1|U|118
9G6J|1|1|G|119
9G6J|1|1|A|120
9G6J|1|1|A|121
9G6J|1|1|A|122
*
9G6J|1|1|U|148
9G6J|1|1|A|149
9G6J|1|1|A|150
9G6J|1|1|U|151
9G6J|1|1|U|152
9G6J|1|1|U|153
9G6J|1|1|G|154
9G6J|1|1|A|155
9G6J|1|1|A|156
9G6J|1|1|G|157
*
9G6J|1|1|C|263
9G6J|1|1|G|264
9G6J|1|1|A|265
9G6J|1|1|C|266
9G6J|1|1|G|267
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain AI
- Ribosomal 60S subunit protein L35A
- Chain AJ
- 60S ribosomal protein L36
- Chain p
- 60S ribosomal protein L8
- Chain t
- 60S ribosomal protein L13
- Chain v
- Ribosomal protein L15
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