J3_9G6J_004
3D structure
- PDB id
- 9G6J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.15 Å
Loop
- Sequence
- CGAUAGCGAACAAGUAC*GGAAAG*CUUG
- Length
- 27 nucleotides
- Bulged bases
- 9G6J|1|1|U|343, 9G6J|1|1|A|351, 9G6J|1|4|U|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9G6J_004 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.0488
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
9G6J|1|1|C|340
9G6J|1|1|G|341
9G6J|1|1|A|342
9G6J|1|1|U|343
9G6J|1|1|A|344
9G6J|1|1|G|345
9G6J|1|1|C|346
9G6J|1|1|G|347
9G6J|1|1|A|348
9G6J|1|1|A|349
9G6J|1|1|C|350
9G6J|1|1|A|351
9G6J|1|1|A|352
9G6J|1|1|G|353
9G6J|1|1|U|354
9G6J|1|1|A|355
9G6J|1|1|C|356
*
9G6J|1|1|G|363
9G6J|1|1|G|364
9G6J|1|1|A|365
9G6J|1|1|A|366
9G6J|1|1|A|367
9G6J|1|1|G|368
*
9G6J|1|4|C|21
9G6J|1|4|U|22
9G6J|1|4|U|23
9G6J|1|4|G|24
Current chains
- Chain 1
- 25S rRNA
- Chain 4
- 5.8S rRNA
Nearby chains
- Chain 9
- Ribosomal 60S subunit protein L26B
- Chain AK
- Ribosomal protein L37
- Chain AM
- 60S ribosomal protein L39
- Chain l
- Ribosomal 60S subunit protein L4B
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