J3_9G6J_023

3D structure

PDB id

9G6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

UAGAUG*CAUAGCAGG*CGGAUAGCAAUGUCA

Length

30 nucleotides

Bulged bases

9G6J|1|1|A|3142, 9G6J|1|1|G|3143, 9G6J|1|1|A|3180, 9G6J|1|1|G|3181, 9G6J|1|1|C|3182, 9G6J|1|1|G|3184, 9G6J|1|1|A|3233, 9G6J|1|1|A|3235, 9G6J|1|1|C|3237

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9G6J|1|1|U|3141
9G6J|1|1|A|3142
9G6J|1|1|G|3143
9G6J|1|1|A|3144
9G6J|1|1|U|3145
9G6J|1|1|G|3146
*
9G6J|1|1|C|3177
9G6J|1|1|A|3178
9G6J|1|1|U|3179
9G6J|1|1|A|3180
9G6J|1|1|G|3181
9G6J|1|1|C|3182
9G6J|1|1|A|3183
9G6J|1|1|G|3184
9G6J|1|1|G|3185
*
9G6J|1|1|C|3230
9G6J|1|1|G|3231
9G6J|1|1|G|3232
9G6J|1|1|A|3233
9G6J|1|1|U|3234
9G6J|1|1|A|3235
9G6J|1|1|G|3236
9G6J|1|1|C|3237
9G6J|1|1|A|3238
9G6J|1|1|A|3239
9G6J|1|1|U|3240
9G6J|1|1|G|3241
9G6J|1|1|U|3242
9G6J|1|1|C|3243
9G6J|1|1|A|3244

Current chains

Chain 1

25S rRNA

Nearby chains

Chain AG

Ribosomal 60S subunit protein L33A

Chain n

60S ribosomal protein L6

Chain u

Ribosomal 60S subunit protein L14B

Chain w

Ribosomal 60S subunit protein L16A

Chain x

Ribosomal 60S subunit protein L17B