J3_9G7C_019

3D structure

PDB id

9G7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of raiA ncRNA from Clostridium reveals a new RNA 3D fold

Experimental method

ELECTRON MICROSCOPY

Resolution

3.27 Å

Loop

Sequence

CAUAAG*UGAGCAUGGUGCGGCUUAGAUGUAAGUC*GCGAGUG

Length

41 nucleotides

Bulged bases

9G7C|2|A|C|80, 9G7C|2|A|A|81, 9G7C|2|A|U|82, 9G7C|2|A|G|84, 9G7C|2|A|U|85, 9G7C|2|A|U|102

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9G7C|2|A|C|54
9G7C|2|A|A|55
9G7C|2|A|U|56
9G7C|2|A|A|57
9G7C|2|A|A|58
9G7C|2|A|G|59
*
9G7C|2|A|U|76
9G7C|2|A|G|77
9G7C|2|A|A|78
9G7C|2|A|G|79
9G7C|2|A|C|80
9G7C|2|A|A|81
9G7C|2|A|U|82
9G7C|2|A|G|83
9G7C|2|A|G|84
9G7C|2|A|U|85
9G7C|2|A|G|86
9G7C|2|A|C|87
9G7C|2|A|G|88
9G7C|2|A|G|89
9G7C|2|A|C|90
9G7C|2|A|U|91
9G7C|2|A|U|92
9G7C|2|A|A|93
9G7C|2|A|G|94
9G7C|2|A|A|95
9G7C|2|A|U|96
9G7C|2|A|G|97
9G7C|2|A|U|98
9G7C|2|A|A|99
9G7C|2|A|A|100
9G7C|2|A|G|101
9G7C|2|A|U|102
9G7C|2|A|C|103
*
9G7C|2|A|G|188
9G7C|2|A|C|189
9G7C|2|A|G|190
9G7C|2|A|A|191
9G7C|2|A|G|192
9G7C|2|A|U|193
9G7C|2|A|G|194

Current chains

Chain A

raiA (224-MER)

Nearby chains